PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00091939001
Common NameGSBRNA2T00091939001, LOC106424358, LOC106439657
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 207aa    MW: 22422.1 Da    PI: 9.7469
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00091939001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.96.1e-403089362
               zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                         +++lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGGalrnvPvGgg+rkn k+s
  GSBRNA2T00091939001 30 QEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGSRKNAKRS 89
                         7899****************************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027012.3E-333187IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-233381IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3943387IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103571IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MQDPAAYYQS MMAKQLHQQQ KQQQPQFPDQ EQLKCPRCDS PNTKFCYYNN YNLSQPRHFC  60
KSCRRYWTKG GALRNVPVGG GSRKNAKRST SSSTSPSNSH KKAKTPDPDP GSQKETNPDT  120
DPTRMLYGFP IGDQDVKGME MGGGGGGSFS SLLASNMQLG LGGIMLDGSG WDPGMGLGMG  180
LRRSEAGNGG GCSPWTDLAM NRVKKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00091939001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0175642e-49AB017564.1 Arabidopsis thaliana adof1 mRNA for dof zinc finger protein, complete cds.
GenBankAC0252942e-49AC025294.14 Arabidopsis thaliana chromosome 1 BAC F19C24 genomic sequence, complete sequence.
GenBankAK2291062e-49AK229106.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-39-C17.
GenBankBT0257722e-49BT025772.1 Arabidopsis thaliana At1g51700 mRNA, complete cds.
GenBankCP0026842e-49CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013720573.11e-152PREDICTED: dof zinc finger protein DOF3.1-like isoform X1
RefseqXP_013736604.11e-152PREDICTED: dof zinc finger protein DOF3.1-like isoform X1
SwissprotQ94AR68e-88DOF31_ARATH; Dof zinc finger protein DOF3.1
TrEMBLA0A078IHJ81e-152A0A078IHJ8_BRANA; BnaA03g36180D protein
STRINGBra001822.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21270.19e-75DOF zinc finger protein 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]